PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00531g00332.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 223aa MW: 25524.4 Da PI: 6.157

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00531g00332.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	55.4	1.2e-17	84	222	221	374
GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 +++ ++v+ ++k+l+P v+vv+e e++++ +sF++ f e+l + +++E +++++ i+n+++ g++r Peaxi162Scf00531g00332.1 84 PNHFEAVMGAIKGLNPCVIVVSEAEISTDFASFVDCFYETLVSIV----------------PVWLEGVYVRKIIRNIITYHGKQR 152 5667899************************999999886543................4589999************* PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy.rveeesgslvlgWkdrpLvsvSaWr 374 + rh +le Wr+ ++++G++++++s++a + a+ll+ + + +g+ + + +++sl+ Wk+ ++ s+ aW+ Peaxi162Scf00531g00332.1 153 VPRHAKLEVWRDLFRRFGLEEAEMSHSALCIASLLVDRSEHHGFlTFDMDRKSLITSWKGTSMASLLAWT 222 ************************************9996377899*****************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.3E-15	84	222	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSASASGSPV QRIVLLFADA LQQKIDKEIG NMSLNEDEDM EVFTKEIEDV CLPPTYSIHR 60 NTNYLRQNIN NKKDSILWTL LPWPNHFEAV MGAIKGLNPC VIVVSEAEIS TDFASFVDCF 120 YETLVSIVPV WLEGVYVRKI IRNIITYHGK QRVPRHAKLE VWRDLFRRFG LEEAEMSHSA 180 LCIASLLVDR SEHHGFLTFD MDRKSLITSW KGTSMASLLA WTF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015160788.1	2e-45	PREDICTED: scarecrow-like protein 28
TrEMBL	A0A0V0HH62	2e-44	A0A0V0HH62_SOLCH; Putative ovule protein
TrEMBL	M0ZMM4	8e-44	M0ZMM4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003954	1e-44	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25358	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-11	GRAS family protein