PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00533g00037.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 176aa    MW: 19892.7 Da    PI: 10.4692
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00533g00037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.52.2e-2333119190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY  Y ++ GF+vr+ + +ks+++++++++ fvCskeg+  ++  k   ++r++  tr gCk  + v+k+++g w + +l + H
  Peaxi162Scf00533g00037.1  33 NFYLGYTHRNGFNVRRGRVTKSRKDQSVISQAFVCSKEGFFPKKYFK---NNRPQDLTREGCKVLIYVSKKEEGAWAIRRLISGH 114
                               6***************************************9998776...899******************************** PP

                      FAR1  86 nHela 90 
                               nHela
  Peaxi162Scf00533g00037.1 115 NHELA 119
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2033119IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDETTQAVPN LGVENRREPY IDMKFSSLDD TFNFYLGYTH RNGFNVRRGR VTKSRKDQSV  60
ISQAFVCSKE GFFPKKYFKN NRPQDLTREG CKVLIYVSKK EEGAWAIRRL ISGHNHELAT  120
PSSQKFLQSK RKKSKAQKDL IDLLDDSGVR PGASVAFSSA GKFSTTLALP LAFSMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167012.11e-66PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLD5MNY63e-61D5MNY6_SOLLC; Transposon-like element Lyt2-2 DNA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-21FAR1-related sequence 5