PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00536g00710.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 247aa    MW: 27851.3 Da    PI: 7.7701
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00536g00710.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.3e-18178212135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Peaxi162Scf00536g00710.1 178 CQHCGVDKTPQWRGGPMGRKTLCNACGVRYKSGRL 212
                               *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.057172208IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-17172222IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-15174235No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14175210IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.00E-15177226No hitNo description
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16178212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MKMEALDLTT CFMVDDDILN FSLDDDEKNA SSSSSSFESV GFLQDDHSRS FHECVEEELE  60
WLSNKDAFPA VEFDIFSDNV PNVIFDHHSP VSVLENSSGS SNTNTKENTF INSCGSLQVP  120
INYPVRARSK GMKRRRRTVF AELQSEHCVW GNQVNKQEFA LLSLPMTKAK RASIGRRCQH  180
CGVDKTPQWR GGPMGRKTLC NACGVRYKSG RLVPEYRPAN SPTFSPELHS NSHRKVLEMR  240
KQKIGVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266575.11e-125PREDICTED: GATA transcription factor 1-like isoform X1
TrEMBLA0A314KZW51e-123A0A314KZW5_NICAT; Gata transcription factor 1
STRINGXP_009758423.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.18e-43GATA transcription factor 1