PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00549g00222.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

WRKY

Protein Properties

Length: 317aa MW: 35398.3 Da PI: 10.0318

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00549g00222.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.9	7.9e-32	245	302	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Peaxi162Scf00549g00222.1 245 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 302 99**********************988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	8.5E-19	195	241	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	6.9E-34	231	303	IPR003657	WRKY domain
PROSITE profile	PS50811	30.549	238	304	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	240	303	IPR003657	WRKY domain
SMART	SM00774	1.9E-38	243	303	IPR003657	WRKY domain
Pfam	PF03106	2.7E-27	245	301	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAVELMMDYT NTRNCTYVTK LEEKSVVQEA ASGLESVEKL IRLLSQTQSQ QIQQQNKSSP 60 MEIEKVADAA VTKFKKVISL LDRNRTGHAR FRKAPVIQQN YVDTKVYSPT PIQQVPLISY 120 EHYNSQQVLP MVPKTISFTY SPEMSRTNSF NISTVTGETE SKQQHSSSSA FQITNLSSQV 180 SNSAGKPPLS SSSLKRKCSL SENAVSGKCS GSSGRCHCSK RRKLRLKRVV RVPAISMKMA 240 DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPTM LIVTYEGEHN 300 HSQLSVAETS SLILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	231	302	2	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY157063	9e-62	AY157063.1 Lycopersicon esculentum WRKY transcription factor IId-4 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608534.1	0.0	PREDICTED: probable WRKY transcription factor 7
Refseq	XP_016498573.1	0.0	PREDICTED: probable WRKY transcription factor 7
Swissprot	Q9STX0	4e-94	WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBL	A0A0V0HVF2	0.0	A0A0V0HVF2_SOLCH; Putative WRKY transcription factor 15-like
STRING	XP_009608534.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	4e-77	WRKY DNA-binding protein 15