PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00553g00033.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 156aa    MW: 18005.4 Da    PI: 8.7003
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00553g00033.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.9e-191859142
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              k+i+n+  r+vtfskRr g++KKA+EL++L +ae+a+ii s 
  Peaxi162Scf00553g00033.1 18 KPINNQASRHVTFSKRRLGLFKKASELCILSGAEIAIIIPSL 59
                              68************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-221070IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.1421058IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-2311101IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-111232IPR002100Transcription factor, MADS-box
PfamPF003193.9E-182067IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-113247IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MNGNTKKKTQ GRRRIAIKPI NNQASRHVTF SKRRLGLFKK ASELCILSGA EIAIIIPSLK  60
RHRLFAFGHP SVDAVIDRYV NGKSSSTTAD QLNNMQRNNQ YYSDICRELE EEKKKKKEMI  120
DERKIVNDDN DGGFWWDEPT DDFGIDELEE FLTALE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402048e-33AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence.
GenBankHG9755138e-33HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602824.19e-73PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7ERW34e-70A0A3Q7ERW3_SOLLC; Uncharacterized protein
STRINGXP_009602824.13e-72(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-31AGAMOUS-like 62