PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00559g00009.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 162aa    MW: 17667 Da    PI: 7.0146
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00559g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.4e-39131061100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasn      +lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqq
  Peaxi162Scf00559g00009.1  13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASN------ELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQ 91 
                               7**************************************97......89************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ l+++la +++e
  Peaxi162Scf00559g00009.1  92 QIDLLQTQLAIAQAE 106
                               **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.23312107IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3813104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKESGRKQGV ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNELPEHQR  60
GDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDLLQTQL AIAQAEVVHM RMRQFSSMSS  120
GDTGGNSPEN VSPSSRHTQA QPTMSLFTMD MVVDHTNMGE SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4591257121LOB family transfactor Ramosa2.1
5ly0_B2e-4591257121LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755232e-92HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603165.11e-107PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE96e-66LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1S4BXL91e-105A0A1S4BXL9_TOBAC; LOB domain-containing protein 4-like
TrEMBLA0A3Q7IXK01e-105A0A3Q7IXK0_SOLLC; Uncharacterized protein
STRINGXP_009603165.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-58LOB domain-containing protein 4