PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00574g00914.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 160aa    MW: 17844.6 Da    PI: 9.0181
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00574g00914.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.21.8e-35101101101
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               aCaaC + +  C++dC+lapyfpa+qpk f+nvh+lFG+ n+lkll +l+++ +e am+s++y+A+ar + PvyG+v+ i++l++
  Peaxi162Scf00574g00914.1  10 ACAACNYRNIPCTSDCPLAPYFPADQPKVFENVHRLFGVINILKLLGQLDPSLKESAMKSIIYQANARHKHPVYGCVADIQNLKS 94 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkeel 101
                                ++  ++el++++++l
  Peaxi162Scf00574g00914.1  95 SIQLYEEELQKVRAQL 110
                               ***********99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0849110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3310107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSLNGGTSRA CAACNYRNIP CTSDCPLAPY FPADQPKVFE NVHRLFGVIN ILKLLGQLDP  60
SLKESAMKSI IYQANARHKH PVYGCVADIQ NLKSSIQLYE EELQKVRAQL ASYRQKHQLQ  120
GISSSTLADS VSQIQLDTVP PPRISIERYN TVCPALLRMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2661257125LOB family transfactor Ramosa2.1
5ly0_B3e-2661257125LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482365.11e-69PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS66e-40LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A1S4B0913e-68A0A1S4B091_TOBAC; LOB domain-containing protein 27-like
STRINGXP_009588931.11e-68(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-42LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]