PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00577g00036.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ZF-HD
Protein Properties Length: 247aa    MW: 27534.9 Da    PI: 8.4586
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00577g00036.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer50.45.2e-1689120335
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee 35 
                               +v+Y eClkNhAa++Gg+a DGC+Efmps gee
  Peaxi162Scf00577g00036.1  89 GVKYMECLKNHAAAIGGNARDGCCEFMPS-GEE 120
                               689*************************9.555 PP
2Homeobox192.4e-06181236152
                               TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                               +r Rt+ft+eq e L ++ e    k ++++ + + +  ++lg++ r+ kvW +N +
  Peaxi162Scf00577g00036.1 181 KRFRTKFTPEQKEKLFNFAEkagwKIQKLDDSVIHQFCQELGIKRRVLKVWMHNNK 236
                               789**********9987666777779****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-1390121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-991121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152316.69992149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-28176242IPR009057Homeodomain-like
SuperFamilySSF466895.85E-20176241IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-26180236IPR006455Homeodomain, ZF-HD class
CDDcd000863.50E-4181234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSNISTQVVA LNNNNNNNNN KSSNVEDGYY PNENGSQAME VHDQERVIHE EPLSEGNSKK  60
YMVIVRNSST PFGYNKAGGN NDNIIDEGGV KYMECLKNHA AAIGGNARDG CCEFMPSGEE  120
GPEVIGYPTG TLIITPKAAL EQRKISYKNG IITSPTSDSD DEKEGAGFMA LKRPCQQAMK  180
KRFRTKFTPE QKEKLFNFAE KAGWKIQKLD DSVIHQFCQE LGIKRRVLKV WMHNNKHNSA  240
KKSSPTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-221792381675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230704.17e-56zinc-finger homeodomain protein 4
SwissprotO647224e-43ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A151SB962e-54A0A151SB96_CAJCA; ZF-HD homeobox protein At4g24660 family
TrEMBLA0A438JA844e-54A0A438JA84_VITVI; Zinc-finger homeodomain protein 3
STRINGXP_007154109.13e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1837924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.15e-45homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]