PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00584g00031.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 221aa    MW: 24842.2 Da    PI: 4.7644
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00584g00031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-052951123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C++ Fs+   L  H++ H
  Peaxi162Scf00584g00031.1 29 YRCSFCKRGFSNAQALGGHMNIH 51
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.35E-62755No hitNo description
PROSITE profilePS5015711.4682956IPR007087Zinc finger, C2H2
SMARTSM003550.00532951IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MENDPSNSSE KYQRTWCSDE LGVSQIKFYR CSFCKRGFSN AQALGGHMNI HRKDRAKLRE  60
ISTDNLNIDQ KSVSPSRSAP VPSAGDVLLQ QEVSGDDETS SPSKRRCVTP EEEHDDDHDH  120
PISKAKDDNQ ELINKNLLQL PLFVDSPSKE VINSEETREG NKLIYSQKGT SWGESELLDQ  180
KGCGTLDEKP KRQAENNDMQ QSDDSKLDLE LRLGPDSSMK S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541384.15e-74PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A1U8EBZ51e-72A0A1U8EBZ5_CAPAN; transcriptional regulator TAC1-like
STRINGXP_009791594.15e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein