PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00593g00002.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22379.6 Da    PI: 5.0807
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00593g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405e-1318461846
                              HHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                    SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgkl 46
                              + ++KKA+ELSvLCd+ v +iifs++ k+
  Peaxi162Scf00593g00002.1 18 ANLFKKAQELSVLCDVAVGIIIFSTDEKI 46
                              679**********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.83846IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-14985IPR002100Transcription factor, MADS-box
PfamPF003196.0E-11945IPR002100Transcription factor, MADS-box
SMARTSM004320.0021252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MASNTVCERN ALLHRKVANL FKKAQELSVL CDVAVGIIIF STDEKIPIMW PSETKVRQIL  60
TSYLGRSEYQ RTKKLVLHEN YLREKLECKA EEIRKMEEKM EMEFLFNQLI MGMSIYDLDA  120
EQLRGLIKLA TLKKAKVEER KQQLKEERMK QLNEDDVQPV EPPVAGGESG AGPEPAEGAN  180
NNAGEQKDDE HTKDSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685130.0FJ168513.1 Petunia x hybrida type I MADS box transcription factor (MADSy8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB6DT651e-129B6DT65_PETHY; Type I MADS box transcription factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-11AGAMOUS-like 96