PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00611g00514.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 130aa MW: 14621.2 Da PI: 4.2709

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00611g00514.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.9	1.8e-10	40	71	18	49
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49 + ++KKA+ LS+LCd+e a++i ++ ++ e Peaxi162Scf00611g00514.1 40 ASLFKKAQKLSILCDVELALLISCPDENMAEL 71 689***********************999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.93E-10	25	89	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.961	26	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.7E-8	27	68	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MDIVMEIQER HEAVKELERN FKEHHQSESE RKALLPRNVA SLFKKAQKLS ILCDVELALL 60 ISCPDENMAE LATFKMANVE EKRKQLNEED VQPVEPPVAG DESGTGPEPA EGDNNNAGEE 120 KDDEHPKDSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14805	2	10