PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00611g00515.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 419aa    MW: 48178.2 Da    PI: 9.7976
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00611g00515.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.4e-11346346
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                              +++++ r+  +s+  + ++KKA+ELSvL d+e+ + ifs++ ++
  Peaxi162Scf00611g00515.1  3 SKSEIERKALLSRKVASLFKKAQELSVLSDVEIGITIFSPDENV 46
                              68899999999999**************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0013152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.834441IPR002100Transcription factor, MADS-box
PfamPF003197.1E-10546IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-12585IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.5.1107.3E-4211267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MASKSEIERK ALLSRKVASL FKKAQELSVL SDVEIGITIF SPDENVPITW PSETQARQGL  60
TRYLGRSEFQ RSKKLVLHEN YLREKLEARV EEIRKMEERM EMEFLFNQLV MGMSIYALDA  120
RQLKGLIELA ALKKAKVEER KKQLDEEKKK QLNEEDSQPV EPPVVGGESG TGSAPTEGDN  180
IITTMLEKRR TMNTPKIPNK HTIFLLFCRC DMAVLVESQG AQFDDIESQR RCSTIASGKK  240
ALKEYKKMDI FFPIILRLII ILVVALLISS PDENMAELAT FKMANVEEKR KQLDEEDVQP  300
VEPPGMKAVH DLNRQKVITT MLEKKRMMNT PKIPLKHTIF LSKENKSKKD MYIKRLLKSK  360
KALAYMVSRI QFSIYRETVK QIYYTFTGEK PDEAVLHILR STGQSETFLE KAIQEQGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685140.0FJ168514.1 Petunia x hybrida type I MADS box transcription factor (MADSy9) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-10AGAMOUS-like 36