PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00618g00123.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HD-ZIP

Protein Properties

Length: 217aa MW: 25545.4 Da PI: 4.595

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00618g00123.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.4e-20	25	75	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k Peaxi162Scf00618g00123.1 25 RFTDEQVKLLESMFKEKTKLEPRKKVELARDLGLQPRQVAIWFQNRRARWK 75 7*************************************************9 PP
2	HD-ZIP_I/II	121.4	4.6e-39	24	112	4	92
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+++eqvklLE++F+e++kLep++Kvelar+Lglqprqva+WFqnrRAR+k+kq+E++y++Lk+++d+l+ + e+L+ke+e+L Peaxi162Scf00618g00123.1 24 KRFTDEQVKLLESMFKEKTKLEPRKKVELARDLGLQPRQVAIWFQNRRARWKSKQIEHEYRVLKEEFDNLNMQFETLKKEKESLL 108 8************************************************************************************ PP HD-ZIP_I/II 89 eelk 92 ++l+ Peaxi162Scf00618g00123.1 109 KQLE 112 9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.35E-19	9	78	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-20	13	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	17	77	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	19	81	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-17	25	75	IPR001356	Homeobox domain
CDD	cd00086	1.86E-15	25	78	No hit	No description
PRINTS	PR00031	2.5E-6	48	57	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.5E-6	57	73	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.5E-11	77	112	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEVEDTPVHW NNESSNKKST KDGKRFTDEQ VKLLESMFKE KTKLEPRKKV ELARDLGLQP 60 RQVAIWFQNR RARWKSKQIE HEYRVLKEEF DNLNMQFETL KKEKESLLKQ LENNHSGSSR 120 SQDSIESEIY TCSVNGGTEL EWKDNIQDCL VASLDQERIT EVDNDRTIEQ FKWKEEAEFW 180 DVEELGDSPL ASPEHWCAID QDGALDLSCG NSKLWEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	77	RRARWKSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803292.1	1e-110	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_016508631.1	1e-110	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A1S4D5H4	1e-109	A0A1S4D5H4_TOBAC; homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A1U7YGQ4	1e-109	A0A1U7YGQ4_NICSY; homeobox-leucine zipper protein ATHB-12-like
STRING	XP_009803292.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	2e-33	homeobox 7