PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00620g00013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 153aa    MW: 18164.6 Da    PI: 6.7928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00620g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-1317981099
                              HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                        B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                               +k+g l +p +++ ++  g++++e+  l+    + ++W+vkl  ++ +    +++GW++F+++++L+  D++vF+++g ++f   v
  Peaxi162Scf00620g00013.1 17 GFKHG-LKIPTSYL-KYleGYDQHEHAVLRRAGNKEKEWSVKL--NGWR----FEEGWEKFAEEHDLQLEDVLVFRHEGYMKF--EV 93
                              45555.********.677988877776666666888*******..6665....99*********************9999999..99 PP

                              EEE-S CS
                        B3 95 kvfrk 99
                              ++f++
  Peaxi162Scf00620g00013.1 94 SIFDS 98
                              99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-19499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-18499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.209799IPR003340B3 DNA binding domain
CDDcd100179.73E-16897No hitNo description
SMARTSM010193.5E-141099IPR003340B3 DNA binding domain
PfamPF023623.9E-101898IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MKVPPEKPHF FKPIVPGFKH GLKIPTSYLK YLEGYDQHEH AVLRRAGNKE KEWSVKLNGW  60
RFEEGWEKFA EEHDLQLEDV LVFRHEGYMK FEVSIFDSNT HCNRKYPENQ QQEAAHITVE  120
ETNLFHACAL IQFYTTNCFN VQQTVGNNKL FYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801917.12e-50PREDICTED: B3 domain-containing protein REM10-like isoform X3
TrEMBLA0A1U7YCS55e-49A0A1U7YCS5_NICSY; B3 domain-containing protein REM10-like isoform X3
STRINGSolyc08g006240.1.13e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-24B3 family protein