PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00620g00027.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRF
Protein Properties Length: 209aa    MW: 23481.8 Da    PI: 8.9492
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00620g00027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC711.4e-22123166144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               +aep+rCrRtDGKkWRCs+ v++++k+CE+H+hrgr+ +rk+++
  Peaxi162Scf00620g00027.1 123 EAEPRRCRRTDGKKWRCSKGVVQNHKYCEKHMHRGRHHTRKHVK 166
                               58****************************************97 PP
2QLQ43.87.8e-165488337
                       QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              FT  Q q+L++Q  +yKy+ a++PvP++L+ +i+k
  Peaxi162Scf00620g00027.1 54 FTFLQRQELEQQFIIYKYIEAGLPVPSHLIIPICK 88
                              9999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.9E-45288IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.555388IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-125487IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.422123167IPR014977WRC domain
PfamPF088793.5E-17124165IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MYSLSRFQAV YLGLVTYVSN GDGLLELGLN LELSQHGGNH ECCYSKFITS GHGFTFLQRQ  60
ELEQQFIIYK YIEAGLPVPS HLIIPICKSI ACSFKGLHDS IRQNCPNSMG YGSLCLDFKS  120
GTEAEPRRCR RTDGKKWRCS KGVVQNHKYC EKHMHRGRHH TRKHVKPASS NMQLSSSTSK  180
SISTTMELGQ VHQISELDAT SFSIALPIN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553045.17e-71PREDICTED: growth-regulating factor 12-like isoform X1
SwissprotQ6AWX71e-42GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A1U8FBD82e-69A0A1U8FBD8_CAPAN; growth-regulating factor 12-like isoform X1
STRINGXP_009586881.15e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1447199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.18e-32growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]