PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00621g00117.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 767aa    MW: 85299.2 Da    PI: 6.8803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00621g00117.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016652677123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               ++C    C +sF +k +L+ H r+ +
  Peaxi162Scf00621g00117.1 652 HRCDieGCRMSFQTKVELQLHKRNrC 677
                               789999****************9877 PP
2zf-C2H213.40.00023676699223
                               EET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                               +Cp   Cgk F+++ +  +H+r+H
  Peaxi162Scf00621g00117.1 676 RCPieGCGKKFTSHKYALVHQRVH 699
                               69999*****************99 PP
3zf-C2H211.80.00077735761123
                               EEET..TTTEEESSHHHHHHHHHH..T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                               ykC+   Cg +F+  s++ rH r+  H
  Peaxi162Scf00621g00117.1 735 YKCKveGCGLTFRFVSDYSRHRRKtgH 761
                               99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.9E-4644674IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035510652674IPR015880Zinc finger, C2H2-like
SMARTSM003550.024675699IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.74E-6675712No hitNo description
PROSITE profilePS5015712.175675704IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-6676703IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280677699IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-10704729IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0023705729IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635705734IPR007087Zinc finger, C2H2
PROSITE patternPS000280707729IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-10715757No hitNo description
Gene3DG3DSA:3.30.160.606.5E-11730758IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.265735766IPR007087Zinc finger, C2H2
SMARTSM003550.28735761IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280737761IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
TCLWNTEFPL HAVDTMERNG GHFLNHDGVS MSAQPSGFAV SPHEGQKSQS HHFLDTENAA  60
LASKVELEKV WDVSRGSLRP HIFCVEHAIQ TEELLHTKGG ANVLVICHSD FQKIRAHAAI  120
VAEEIGTAFK YNEISLANAS QGHLSLIDLA IEDEEQDKYA EDWTLKLNIN LRHCVKAQRN  180
CPLKKLKHAM ILGGVFSDTT PRSHSSSLDW QSRKVRSSRK CNNSTESTSL AHLQIEKVLD  240
SGSTVDKQNA RKGNITLQYS RKKYKFKSCS PAEVTRVIVD PFNVSIEEVS VADAKTMGTT  300
LLRDENAGSS SSGERFFTAS DGKPGLQHEH EMVLVNRDQN GDLLASQDAE LLVTTLMVEF  360
DEANGEICTS EKLALEDKTC DTNSTSCHTE RKSTGPETSE ETEIAHLTAP TCTTISVVQS  420
TANNENLKEN RDMTESGIRN KSAHLKEANF EKEDRGADDK AIMTRSLVPV NSSGSCTDGP  480
SRSSNEQIED QIPEQFASGS EGSDSESLQN SVEQEIQIDN ADQDVAVSDH VKLVEEACPS  540
AGSLEVMRET SSLEHSQIEA DDDTSSAIVS RRAAKSGGKR RRELDLLTDD GCNIVGFVKS  600
PCEGLRPRAR KNVPESRADT KKPLEEKPTG KKVKRSLQSS NKDKKEQRKG THRCDIEGCR  660
MSFQTKVELQ LHKRNRCPIE GCGKKFTSHK YALVHQRVHQ NDRPLKCPWK GCTMTFKWAW  720
ARTEHLRVHT GERPYKCKVE GCGLTFRFVS DYSRHRRKTG HYVDAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-5465276723138Lysine-specific demethylase REF6
6a58_A2e-5465276723138Lysine-specific demethylase REF6
6a59_A2e-5465276723138Lysine-specific demethylase REF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451016.10.0PREDICTED: probable lysine-specific demethylase ELF6
RefseqXP_016451017.10.0PREDICTED: probable lysine-specific demethylase ELF6
TrEMBLA0A1S3YGF20.0A0A1S3YGF2_TOBAC; probable lysine-specific demethylase ELF6
STRINGXP_009589507.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-64C2H2 family protein