PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00628g00028.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 256aa    MW: 29039.6 Da    PI: 8.3282
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00628g00028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.8e-17109163256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++ keq  +Le+ F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  Peaxi162Scf00628g00028.1 109 RKKLRLAKEQSAVLEDSFKEHSTLNSKQKRDLATRLRLRPRQVEVWFQNRRARTK 163
                               6778899**********************************************98 PP
2HD-ZIP_I/II118.24.4e-38109198191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+keq+++LE+sF+e+++L++++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lk+en+rL+ke +
  Peaxi162Scf00628g00028.1 109 RKKLRLAKEQSAVLEDSFKEHSTLNSKQKRDLATRLRLRPRQVEVWFQNRRARTKLKQTEVDCEILRKCYEDLKDENRRLNKELQ 193
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eL+ +l
  Peaxi162Scf00628g00028.1 194 ELK-SL 198
                               **9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.471105165IPR001356Homeobox domain
SuperFamilySSF466892.14E-16107174IPR009057Homeodomain-like
SMARTSM003892.2E-14107169IPR001356Homeobox domain
PfamPF000467.6E-15109163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-16109163IPR009057Homeodomain-like
CDDcd000869.91E-13109166No hitNo description
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PfamPF021834.1E-10165198IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.2E-17165208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MIYNTSLSLS LGSGGSSTTP DSIQLHQHNN KRKLSTHEQE LLDINPLPSL TLGISSSSVS  60
VAVSSFSNSS VKRELRETSL EEEVEEFDTN KVIFSQKLDD HDEDQFGTRK KLRLAKEQSA  120
VLEDSFKEHS TLNSKQKRDL ATRLRLRPRQ VEVWFQNRRA RTKLKQTEVD CEILRKCYED  180
LKDENRRLNK ELQELKSLKM AAPFRLQLSA ATLSMCPSCE RTYGNGDNST NISFAIGDQK  240
PHFYGPFTNP SAALLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113TRKKLRL
2157165RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483184.11e-124PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-69HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1S4B2W31e-123A0A1S4B2W3_TOBAC; homeobox-leucine zipper protein HAT22-like
STRINGXP_009783420.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-66HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]