PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00647g00411.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 596aa MW: 66503.3 Da PI: 6.0648

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00647g00411.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.4	1.5e-15	65	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +f+++YA++vGFs+++ + ++ k +g i++ +f Cs e +++++ ++ C +l++++++++ w+vtk++++H Peaxi162Scf00647g00411.1 65 NFFDAYARRVGFSTQVGQFSRAKPDGPIISWDFSCSSEDSKRKNVES--------------CSSMLRIERKDSDSWVVTKFVEDH 135 69********************************99888887766..............******************** PP FAR1 86 nHela 90 nH+++ Peaxi162Scf00647g00411.1 136 NHSIV 140 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-12	65	140	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.1E-10	284	325	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.942	291	327	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-7	302	329	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MNVEVIDVER QKRLKSGERI AEPDQASNDS LPDSFTERDA IIEVDDGEEK PYVGMEFQTQ 60 EAAKNFFDAY ARRVGFSTQV GQFSRAKPDG PIISWDFSCS SEDSKRKNVE SCSSMLRIER 120 KDSDSWVVTK FVEDHNHSIV NAGKVHYLRP RRPFAGASKT VLEAPGTPAD VIVSVDGNRV 180 FANSNEGAKN ASHVELNRTT LPVFFKHYER ALESSLEREI ESDFDTNCTT PVLKTASPME 240 QQAANLYTKK VFAKFQEELV ETFAYTANKI DGDETVSKFR VAKYEQDDKA YIVMFNLAEM 300 KASCSCQMFE YVGILCRHIL TVFTVTNVLT VPSHYILKRW TKSAKVRQGA DEEAIVKQGN 360 NSLISRFNHL CLEALRYAEE GAVSVETYDA AISALRDGLR KISIVAKDVA RPPSSQGSGS 420 IQDESIKRTL VTSDTAPSLW PWQDAMPRHF NLNDAGLPAG DLYQPTMTPV AINRDGGLAD 480 NVVVCTCFKS MAWVIENKSL ASKVAVINLK LQDYGMSPAG ETEVHFRLTR VTLEPMLKSM 540 AFISQQLSLP ANRVAVVNLK LQDAKTPSGE TEVKFQVSRE TLGSMLRSMA YIREQL

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MNVEVIDVER QKRLKSGERI AEPDQASNDS LPDSFTERDA IIEVDDGEEK PYVGMEFQTQ  60
EAAKNFFDAY ARRVGFSTQV GQFSRAKPDG PIISWDFSCS SEDSKRKNVE SCSSMLRIER  120
KDSDSWVVTK FVEDHNHSIV NAGKVHYLRP RRPFAGASKT VLEAPGTPAD VIVSVDGNRV  180
FANSNEGAKN ASHVELNRTT LPVFFKHYER ALESSLEREI ESDFDTNCTT PVLKTASPME  240
QQAANLYTKK VFAKFQEELV ETFAYTANKI DGDETVSKFR VAKYEQDDKA YIVMFNLAEM  300
KASCSCQMFE YVGILCRHIL TVFTVTNVLT VPSHYILKRW TKSAKVRQGA DEEAIVKQGN  360
NSLISRFNHL CLEALRYAEE GAVSVETYDA AISALRDGLR KISIVAKDVA RPPSSQGSGS  420
IQDESIKRTL VTSDTAPSLW PWQDAMPRHF NLNDAGLPAG DLYQPTMTPV AINRDGGLAD  480
NVVVCTCFKS MAWVIENKSL ASKVAVINLK LQDYGMSPAG ETEVHFRLTR VTLEPMLKSM  540
AFISQQLSLP ANRVAVVNLK LQDAKTPSGE TEVKFQVSRE TLGSMLRSMA YIREQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487806.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_016487807.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_016487808.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_016487809.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_016487810.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_016487811.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	1e-159	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S4BG32	0.0	A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_009616992.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-152	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]