PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00648g10016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 204aa    MW: 22555.2 Da    PI: 6.1447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00648g10016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1755105155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr +  + +Wv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+ +l+g
  Peaxi162Scf00648g10016.1  55 PVYRGVRKRN-SDKWVCEVREP---NKKSRIWLGTYPTAEMAARAHDVAAIALRG 105
                               68*****888.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1355105IPR001471AP2/ERF domain
PROSITE profilePS5103221.85256113IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-2156115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-3156115IPR001471AP2/ERF domain
SMARTSM003801.0E-2856119IPR001471AP2/ERF domain
PRINTSPR003676.4E-85768IPR001471AP2/ERF domain
CDDcd000181.15E-3057115No hitNo description
PRINTSPR003676.4E-87995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDIFQSNSSD RLLDSSSHSD NSSCINNISD EEVILASNNP KKRAGRKKFT ETRHPVYRGV  60
RKRNSDKWVC EVREPNKKSR IWLGTYPTAE MAARAHDVAA IALRGRSACL NFADSAWKLP  120
VPASSDPKDI QKAAAEAAEA FRPLESAGEE SKEESTTPET PSKSEFFMDE EALFDMPGLL  180
ASMAEGLMLP PPQCSEGHDI KRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13541121271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7863981e-101AJ786398.1 Schedonorus arundinaceus mRNA for avirulence-like protein 1 (avrl gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784267.19e-98PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ937e-74DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLB3TPP36e-97B3TPP3_SOLHA; CRT binding factor 3
STRINGXP_009784267.14e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.19e-66C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]