PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00656g00007.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SRS

Protein Properties

Length: 344aa MW: 37445.2 Da PI: 8.4871

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00656g00007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	229.1	8e-71	117	274	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelks 80 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++ ++ ++++s+ +++ ++ Peaxi162Scf00656g00007.1 117 GGGINCQDCGNQAKKDCQHLRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLAALQQQNQVQHqtqqlslRADHSNIPKRPRE 201 5789**************************************************99888776667888885555555555566 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +s+l++t+l++ +s e+ + +P+evss+avfrcvrvs++dd+e+++aYqtav+igGh+fkGiLydqG+e+ Peaxi162Scf00656g00007.1 202 TPSSNLACTRLPNISSGLEVGGH-FPAEVSSQAVFRCVRVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPES 274 79999*****999877766.**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-67	119	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-26	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.4E-28	224	272	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MSGFFTLGGG NKDQEQELAT NSLLLFKNEE IYNKGFELWQ QYYQLHQQRA QSPHHHQHVH 60 QDVDFSVGVG PSSNNNNNRR IVSGSSNSSS GNNNLDDYNS FRSGFRVMRS SSGGGGGGGI 120 NCQDCGNQAK KDCQHLRCRT CCKSRGFQCS THVKSTWVPA AKRRERQQQL AALQQQNQVQ 180 HQTQQLSLRA DHSNIPKRPR ETPSSNLACT RLPNISSGLE VGGHFPAEVS SQAVFRCVRV 240 SAIDDAEDQF AYQTAVNIGG HLFKGILYDQ GPESRYATGG GEGSSGGGAS QQALNFITGA 300 TTSTTAAATT SHQQVPVTMY DPSVYPTPIT AFMAGTQFFP PPRP

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MSGFFTLGGG NKDQEQELAT NSLLLFKNEE IYNKGFELWQ QYYQLHQQRA QSPHHHQHVH  60
QDVDFSVGVG PSSNNNNNRR IVSGSSNSSS GNNNLDDYNS FRSGFRVMRS SSGGGGGGGI  120
NCQDCGNQAK KDCQHLRCRT CCKSRGFQCS THVKSTWVPA AKRRERQQQL AALQQQNQVQ  180
HQTQQLSLRA DHSNIPKRPR ETPSSNLACT RLPNISSGLE VGGHFPAEVS SQAVFRCVRV  240
SAIDDAEDQF AYQTAVNIGG HLFKGILYDQ GPESRYATGG GEGSSGGGAS QQALNFITGA  300
TTSTTAAATT SHQQVPVTMY DPSVYPTPIT AFMAGTQFFP PPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599252.1	1e-153	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
Swissprot	K4B6C9	3e-83	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4BBZ4	1e-149	A0A1S4BBZ4_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X1
STRING	XP_009599252.1	1e-152	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	7e-62	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]