PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00658g00051.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 212aa    MW: 23590.7 Da    PI: 4.4921
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00658g00051.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.25.5e-3871071100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrr+C+++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a++++ yeA ar++dP+yG+vg+i +lq
  Peaxi162Scf00658g00051.1   7 SCGACKFLRRRCSSECIFAPYFCYEQaSNNFAAVHKVFGASNVSKLLVNLPLHCRSEAAATISYEALARMHDPIYGCVGHIYALQ 91 
                               6***********************9978********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+++l +e++ ++++
  Peaxi162Scf00658g00051.1  92 QQVDSLIEEIEFIGNQ 107
                               ********99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7346108IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-357102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTIPGSSCGA CKFLRRRCSS ECIFAPYFCY EQASNNFAAV HKVFGASNVS KLLVNLPLHC  60
RSEAAATISY EALARMHDPI YGCVGHIYAL QQQVDSLIEE IEFIGNQMAI CASEVPMQNT  120
INTLQYPPEC LNMKVEVNNT NHSISSLAHF NDTSITAAFD IQIINAELPE LNEFDYSFFN  180
PFCDLEISER VFNGADLTHQ SALAILGDWQ QC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3351029105LOB family transfactor Ramosa2.1
5ly0_B2e-3351029105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757428.12e-98PREDICTED: LOB domain-containing protein 33-like
RefseqXP_016488257.12e-98PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS82e-51LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A1S4BHD44e-97A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like
TrEMBLA0A1U7UT894e-97A0A1U7UT89_NICSY; LOB domain-containing protein 33-like
STRINGXP_009757428.16e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.18e-54LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]