PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00658g00627.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 123aa    MW: 14305.1 Da    PI: 5.012
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00658g00627.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF261.2e-081639225
                              ---SHHHHHHHHHHHHHHHHHHHH CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAe 25
                              +ien+  r+ tfskRr+g+ KKA+
  Peaxi162Scf00658g00627.1 16 KIENEDDRYATFSKRRTGLYKKAS 39
                              59*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0061747IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.755753IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-5929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-10959IPR002100Transcription factor, MADS-box
PfamPF003196.2E-91639IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-52944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEDKKTLGCQ KIPMIKIENE DDRYATFSKR RTGLYKKASK PFFFVHPTVE SIVDRFLSPN  60
RQLSESSRLV AAHSRNRVNE LNNRLDEYDI IEDAVSDQNF EPDEMNDLME YLITLSEAGS  120
KNL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595132.17e-40PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_016446656.17e-40PREDICTED: agamous-like MADS-box protein AGL29
SwissprotQ4PSU42e-14AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1S3Y3F22e-38A0A1S3Y3F2_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009595132.13e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-16AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]