PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00665g00126.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 213aa    MW: 24903.5 Da    PI: 9.3214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00665g00126.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-11117204181
                               EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt+sdv ++ grl + ++ +++       +++ +++++++  d+ g  +e++++ +++ +++vl + W++F+k+++Lke D
  Peaxi162Scf00665g00126.1 117 FVKQLTKSDVDEHqGRLLMNNEDVRREllpllsNEDLASGIKVKTFDQLGHCYEMTFKTWGNYKTHVLLGSWRQFCKDHELKEHD 201
                               99**********9888999999999989**9995566689999999999*999999988************************** PP

                               EEE CS
                        B3  79 fvv 81 
                                v 
  Peaxi162Scf00665g00126.1 202 CVN 204
                               985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023623.0E-7117203IPR003340B3 DNA binding domain
CDDcd100173.70E-14117203No hitNo description
Gene3DG3DSA:2.40.330.101.0E-15117206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16117206IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MELNKRDISA ALLLSWLKYT KITEQDVQDF HTVLQKHSHS LNPTILEAKK FKKLEKSKRE  60
HLFDKNQQTP QTPKAYSARS YKTSPKKIKI SQNSTEFPRF PPVENLEGLI GKCSNPFVKQ  120
LTKSDVDEHQ GRLLMNNEDV RRELLPLLSN EDLASGIKVK TFDQLGHCYE MTFKTWGNYK  180
THVLLGSWRQ FCKDHELKEH DCVNVYEMPN KLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353478.15e-55PREDICTED: B3 domain-containing protein At1g05920-like
TrEMBLA0A314KM323e-60A0A314KM32_NICAT; Putative b3 domain-containing protein
STRINGPGSC0003DMT4000009912e-54(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20600.18e-16B3 family protein