PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00672g00010.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 259aa MW: 30215.7 Da PI: 5.2851

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00672g00010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	83	173	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtklel 83 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ + +k r + ++tr gC a+l+v +++ kw+vtk+++ Peaxi162Scf00672g00010.1 83 DFYMAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYIH-KKDRVllPPPVTREGCPAMLRVALRDGTKWVVTKFVE 166 6****************************************9887.3333345999*********************** PP FAR1 84 eHnHela 90 eHnH+l+ Peaxi162Scf00672g00010.1 167 EHNHALM 173 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-24	83	173	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSEVFMESPS SHAFDVDERK DFLPVDSNDD HGYLEEELTA GMGMYVAEDD KYLGQSNEDQ 60 SSSDNAIEPQ IGMEFNSRDD ARDFYMAYGR RTGFTVRIHH NRRSRINNMV IGQDFVCSKE 120 GFREKKYIHK KDRVLLPPPV TREGCPAMLR VALRDGTKWV VTKFVEEHNH ALMSPSKVPW 180 RGSAKNSVSQ DEKDQRIRDL TLELYNERQR CKWRCAAYQE QLQTLLKFIE DHTDQLSRSV 240 EQAVQRVKEL ENERLEDSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016450611.1	1e-162	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016450612.1	1e-162	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016450613.1	1e-162	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A1S3YF26	1e-161	A0A1S3YF26_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like
STRING	XP_009779431.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14445	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-39	FAR1 family protein