PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00680g00630.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 387aa    MW: 44425.1 Da    PI: 7.0769
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00680g00630.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85e-54271551128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeel+++yL+ kv + +++   +i+evd++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat +gyWka
  Peaxi162Scf00680g00630.1  27 LPPGFRFHPTDEELITFYLASKVFNATFSG-IHIAEVDLNRCEPWELPDAAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKA 110
                               79*************************999.78***************8888999****************************** PP

                       NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tgkd+ev+s+  ++ l+g+kktLvfykgrap+gekt+Wvmheyrl
  Peaxi162Scf00680g00630.1 111 TGKDREVYSAtnGSLLIGMKKTLVFYKGRAPRGEKTKWVMHEYRL 155
                               *********8656667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-6422178IPR003441NAC domain
PROSITE profilePS5100559.83727178IPR003441NAC domain
PfamPF023655.6E-2828155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MLELVDMLAM EEILCELNRE DMNEQGLPPG FRFHPTDEEL ITFYLASKVF NATFSGIHIA  60
EVDLNRCEPW ELPDAAKMGE REWYFFSLRD RKYPTGLRTN RATGAGYWKA TGKDREVYSA  120
TNGSLLIGMK KTLVFYKGRA PRGEKTKWVM HEYRLGGDFS YRNYSSKEEW VICRIFHKIG  180
EKKNPIYQAV GQNCGYINTL KTWSSTSSSL LNNSRAPLVE TTTPNPKTIT STTLLQESFQ  240
NSVQSLHNYY LFHHQENDLM KSLFNNTPIA QTNYHLPMNT SHHVLSPSSF STSQSTKRYK  300
DNKQEICTSL NENGPKQIMQ YPKIEQGNFS QCQPYSGNNC YNQNPMATAF GMNISDWSLV  360
GMNQGMVMED HMDCPIKVTA ESWPFDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-532017813168NAC domain-containing protein 19
3swm_B6e-532017813168NAC domain-containing protein 19
3swm_C6e-532017813168NAC domain-containing protein 19
3swm_D6e-532017813168NAC domain-containing protein 19
3swp_A6e-532017813168NAC domain-containing protein 19
3swp_B6e-532017813168NAC domain-containing protein 19
3swp_C6e-532017813168NAC domain-containing protein 19
3swp_D6e-532017813168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2553740.0AB255374.1 Petunia x hybrida PhCUC3 mRNA for CUP-SHAPED COTYLEDON3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616121.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
RefseqXP_016516166.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0ZSF80.0A0ZSF8_PETHY; CUP-SHAPED COTYLEDON3
STRINGXP_009616121.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-99NAC family protein