PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00683g00114.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 247aa    MW: 28279.3 Da    PI: 9.7309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00683g00114.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.81e-11645544
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               +  r+ tf kR++g+ KK +E  +LC+++ ++i++++++
  Peaxi162Scf00683g00114.1  6 KEKARNATFKKRKEGLKKKLHEFTTLCNVNGCMIMYGPKQ 45
                              5567999******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-4158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.732144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-12290IPR002100Transcription factor, MADS-box
PfamPF003192.6E-13545IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MELMSKEKAR NATFKKRKEG LKKKLHEFTT LCNVNGCMIM YGPKQSNGSN SEPEIWTNNS  60
TTTKSSQEEE IQNLIDEYKK SSLVTRSTKT FGLSDYFTDR NKNIEKELIR LRKMNMEKKY  120
PCWLKFMDHF SEFKLRELIS FLDGKVEKVK SRIDFLKGNM NIVNEYFIKA ASEGMELSRL  180
TNFSDNVSPL MVQGGSELGG FMNNHYEQAI DPYWQFNGAT SFSGGATAFL PIGSKRKADR  240
AFLAALA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255836.11e-100PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1J6IR276e-99A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80
STRINGXP_009774508.15e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-12AGAMOUS-like 82