PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00686g00043.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YC
Protein Properties Length: 251aa    MW: 28879.9 Da    PI: 8.0589
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00686g00043.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC30.57.7e-101492351399
                     NF-YC  13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlr.swlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                               +++ +  ++P  ri++i+k+++  +++s ea  ++ ka e f+ e+  r ++  a   + + +    ++++v++ + fdfl d v
  Peaxi162Scf00686g00043.1 149 KSESALYQFPHNRIHRIIKSENADSRMSQEAIFMVNKATEKFL-EVFCReAYACAFLDRNHYVGYDHLSSVVSKRQRFDFLSDFV 232
                               45556679*********************************96.66666166666666667788899****************** PP

                     NF-YC  97 prd 99 
                               pr+
  Peaxi162Scf00686g00043.1 233 PRK 235
                               *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.37E-16148235IPR009072Histone-fold
PfamPF008081.0E-10156219IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-19157234IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPKLSENLVV PSSSNEECVS DSDEETNNNN NNSANRKEDL VYSRKGNREN ESLKTYIRKQ  60
KIKNDEEKTH NGSQGPNKKK RQVEKVGKKA KKTAEEKAPK KARANNKQGD EEGEEKLVKK  120
MPKSNGEEKK SNAKQKREDG EEEEDEDDKS ESALYQFPHN RIHRIIKSEN ADSRMSQEAI  180
FMVNKATEKF LEVFCREAYA CAFLDRNHYV GYDHLSSVVS KRQRFDFLSD FVPRKVRAED  240
ALAEISKAEE T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-28nuclear factor Y, subunit C10