PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00690g00006.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 417aa MW: 45248.1 Da PI: 7.1047

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00690g00006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Peaxi162Scf00690g00006.1 34 FVCEICNKGFQRDQNLQLHRRGH 56 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.85E-7	33	56	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	33	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.4E-5	34	56	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	34	56	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	34	56	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	75	105	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	98	131	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.85E-7	105	131	No hit	No description
SMART	SM00355	120	110	130	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MVEMENSSSM TVTSDPEAEV MALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 60 KLKQRTSNEV KKRVYVCPEI NCVHHDPSRA LGDLTGIKKH FCRKHGEKKF KCERCTKKYA 120 VLSDCKAHMK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARSHE PMGITNNTEE 180 DLKIDEAVVS KEMSSCSSPP PQPLTPSTGV LSPVFVFPSS TSTSTGQAHS SYSDILCCAI 240 GTEQQPTAIE PMSLSLSSSL YLSNNQPALF QEHQHYGSMT QPALSATALL QKAAQMGATS 300 SNSSFLRGLG LAMSSTPTSD IISNVKLENN VEVPGLGIQI PSNGSSGFTD LMMGPSQSMM 360 FGNKPATLDF LGLGDGANGS SSNGFSAFLN SMEGGFGVVA TTGEPWDDHS DRKPSML

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MVEMENSSSM TVTSDPEAEV MALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  60
KLKQRTSNEV KKRVYVCPEI NCVHHDPSRA LGDLTGIKKH FCRKHGEKKF KCERCTKKYA  120
VLSDCKAHMK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARSHE PMGITNNTEE  180
DLKIDEAVVS KEMSSCSSPP PQPLTPSTGV LSPVFVFPSS TSTSTGQAHS SYSDILCCAI  240
GTEQQPTAIE PMSLSLSSSL YLSNNQPALF QEHQHYGSMT QPALSATALL QKAAQMGATS  300
SNSSFLRGLG LAMSSTPTSD IISNVKLENN VEVPGLGIQI PSNGSSGFTD LMMGPSQSMM  360
FGNKPATLDF LGLGDGANGS SSNGFSAFLN SMEGGFGVVA TTGEPWDDHS DRKPSML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-31	106	167	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-31	106	167	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00403	DAP	Transfer from AT3G50700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244607.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X2
Swissprot	Q9SCQ6	1e-126	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1J6JLN6	0.0	A0A1J6JLN6_NICAT; Zinc finger protein magpie
STRING	XP_009805007.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-103	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]