PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00695g00512.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 340aa    MW: 38601 Da    PI: 5.0906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00695g00512.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33.1e-53121391128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+nratksgyW
  Peaxi162Scf00695g00512.1  12 LPPGFRFHPTDEELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDKKYPNGSRTNRATKSGYW 95 
                               79****************************.99**************95334445667*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd++v++ + ++vg +ktLvfy+grap g +tdWvmheyrl
  Peaxi162Scf00695g00512.1  96 KATGKDRKVVC-HPTVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 139
                               ***********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-626162IPR003441NAC domain
PROSITE profilePS5100557.89212162IPR003441NAC domain
PfamPF023651.3E-2913139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
DLKIYFMGGA SLPPGFRFHP TDEELVGYYL KRKTDGLEIE LEVIPVIDLY KFDPWELPEK  60
SFLPKRDLEW FFFCPRDKKY PNGSRTNRAT KSGYWKATGK DRKVVCHPTV VGYRKTLVFY  120
RGRAPLGDRT DWVMHEYRLC DDVSQGTPIF QGPFALCRVI KRNDVSLKTK DVKQVGCSST  180
TGGFTSANEP IVLSDDTPTQ STYVSNDSNY STPITSPYQT RQIGEYESTM GANSANLWMS  240
PDMILDSSKE CPQGQNASGY CPQYDFPNMT PWQPSDQYEF TSSSSFPSFR GEVELSGDLS  300
SFGCPSPYSI HGSYVGLYGN EDMTYESYDQ NNSYRNPNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-521116816171NO APICAL MERISTEM PROTEIN
1ut4_B9e-521116816171NO APICAL MERISTEM PROTEIN
1ut7_A9e-521116816171NO APICAL MERISTEM PROTEIN
1ut7_B9e-521116816171NO APICAL MERISTEM PROTEIN
4dul_A9e-521116816171NAC domain-containing protein 19
4dul_B9e-521116816171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098740.0AF509874.1 Petunia x hybrida nam-like protein 11 (NH11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575709.10.0PREDICTED: NAC domain-containing protein 45-like
SwissprotO496971e-99NAC71_ARATH; NAC domain-containing protein 71
TrEMBLQ8LRL40.0Q8LRL4_PETHY; Nam-like protein 11
STRINGSolyc08g077110.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62561635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-102NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]