PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00702g00069.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 237aa    MW: 27375 Da    PI: 10.0021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00702g00069.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32160218159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Peaxi162Scf00702g00069.1 160 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHT 218
                               59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33145218IPR003657WRKY domain
SuperFamilySSF1182902.75E-28153218IPR003657WRKY domain
PROSITE profilePS5081129.402155220IPR003657WRKY domain
SMARTSM007741.1E-36160219IPR003657WRKY domain
PfamPF031064.0E-25161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
RKRKHSPLAM FSQNLFEDQD ISSQLGFFTF PPNMGSSALP YGICNQNNTL KTLTIIPSSF  60
AAADCSLNIE STAPRQKEDH LTSIFGGPQL LSWQKSTPNI WPWGGVNESI MSRNIKRRDN  120
LDDHHHLGVS AIKMKKIIKS RRKVREPRFC FKTLSDVDVL DDGYKWRKYG QKVVKNTQHP  180
RSYYRCTQDN CRVKKRVERL AEDPRMVITT YEGRHIHTPS HDEDDSQASS QLNNLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26152217974Probable WRKY transcription factor 4
2lex_A3e-26152217974Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755163e-58HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630231.11e-125PREDICTED: probable WRKY transcription factor 13 isoform X2
RefseqXP_016480880.11e-125PREDICTED: probable WRKY transcription factor 13
RefseqXP_018634566.11e-125PREDICTED: probable WRKY transcription factor 13 isoform X3
TrEMBLA0A1S4AW951e-124A0A1S4AW95_TOBAC; probable WRKY transcription factor 13
STRINGXP_009630231.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-51WRKY DNA-binding protein 13