PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00710g00529.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

YABBY

Protein Properties

Length: 206aa MW: 23353.8 Da PI: 8.2656

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00710g00529.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	25.4	4.4e-08	6	30	2	26
YABBY 2 dvfssseqvCyvqCnfCntilavsv 26 ++f+ + +CyvqC++C+til+v + Peaxi162Scf00710g00529.1 6 HLFELQDTICYVQCGYCTTILLVKL 30 789999****************986 PP
2	YABBY	156.5	2.2e-48	52	190	23	165
YABBY 23 avsvPstslf.kvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 vsvP +sl k+vtvrCGhCtsllsvnl+kas +l a+ ++ + + + +v++e+++ +++s+ s+ss++ s Peaxi162Scf00710g00529.1 52 KVSVPCSSLCnKIVTVRCGHCTSLLSVNLMKASlvplHLFASLNQ-------TEHPKPEVDKEETE---DNKKSTADSKSSFMTS 126 59****97369*************998433333333333.......22222222222222...2233334444444555 PP YABBY 103 enedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++e++++ +v p v++PPekrqr+Psayn+fik+ei+r+k+ P+++h++afs+aaknWahfP+ Peaxi162Scf00710g00529.1 127 SDEEDQLENVLPvVNKPPEKRQRAPSAYNCFIKDEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 190 55555555555549**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.7E-49	52	190	IPR006780	YABBY protein
SuperFamily	SSF47095	3.27E-8	138	192	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-4	142	192	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSTLNHLFEL QDTICYVQCG YCTTILLVKL HTYLSSSAAC ILSYFNYFLF HKVSVPCSSL 60 CNKIVTVRCG HCTSLLSVNL MKASLVPLHL FASLNQTEHP KPEVDKEETE DNKKSTADSK 120 SSFMTSSDEE DQLENVLPVV NKPPEKRQRA PSAYNCFIKD EIKRLKTIYP NMTHKQAFST 180 AAKNWAHFPP SQHRESCSLG DRKMPK

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621066.1	1e-108	PREDICTED: axial regulator YABBY 4 isoform X1
Refseq	XP_016511953.1	1e-108	PREDICTED: axial regulator YABBY 4-like isoform X1
Refseq	XP_019228973.1	1e-108	PREDICTED: axial regulator YABBY 4 isoform X3
Swissprot	Q9LDT3	5e-56	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1S4DF36	1e-106	A0A1S4DF36_TOBAC; axial regulator YABBY 4-like isoform X1
STRING	XP_009621066.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-58	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]