PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00715g00039.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 173aa MW: 19375.9 Da PI: 6.5922

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00715g00039.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131	4.9e-41	23	122	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++C l pyfp ++p kfa++hk+FGasn++kll+++p+ +r da++slvyeA+ar+rdPvyG++gvi++l++ Peaxi162Scf00715g00039.1 23 PCAACKFLRRRCVENCLLKPYFPPTEPTKFAVAHKIFGASNIIKLLQEIPPAQRADAVNSLVYEANARIRDPVYGSAGVISNLHE 107 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 + +l+ae al+++e Peaxi162Scf00715g00039.1 108 LVTKLQAENALAQAE 122 ********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.765	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-40	23	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MADHSQSDCS SAVDRTPVLH FTPCAACKFL RRRCVENCLL KPYFPPTEPT KFAVAHKIFG 60 ASNIIKLLQE IPPAQRADAV NSLVYEANAR IRDPVYGSAG VISNLHELVT KLQAENALAQ 120 AEISNLQHKN ANLMALISKD HSSDHHYQFQ DPTLLPYDDN FYHDATAWES LWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-40	23	123	11	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-40	23	123	11	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340077.1	1e-77	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-55	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A3Q7ED82	1e-69	A0A3Q7ED82_SOLLC; Uncharacterized protein
STRING	Solyc01g044520.1.1	2e-70	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-57	LOB domain-containing protein 1