PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00717g00318.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

YABBY

Protein Properties

Length: 187aa MW: 20867.8 Da PI: 9.4188

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00717g00318.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	229.7	7.6e-71	9	164	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 ++sse+vCyv+CnfCntilavsvP + +f++vt+rCGhC++llsvn+ q l+ ++ ++l+++++n++ +++ Peaxi162Scf00717g00318.1 9 TTSSERVCYVHCNFCNTILAVSVPCSNMFNIVTIRCGHCANLLSVNMGSLLQPLPLQDL----------QKLQKQQSNVENANKA 83 6799*************************************************9994..........4444455555554444 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+s+ + ++ e+ pr p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Peaxi162Scf00717g00318.1 84 CGSSSSSKCNRFSAIHSPENEPRLTP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 45555444444445667788888888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-74	11	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.02E-8	104	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-5	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSHDMTSSTT SSERVCYVHC NFCNTILAVS VPCSNMFNIV TIRCGHCANL LSVNMGSLLQ 60 PLPLQDLQKL QKQQSNVENA NKACGSSSSS KCNRFSAIHS PENEPRLTPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLESNK QAKLDHAAGP 180 HKSLGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ767669	0.0	KJ767669.1 Nicotiana tabacum FAS protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234442.1	1e-105	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q9XFB0	1e-72	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	1e-104	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	XP_009798278.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-69	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]