PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00736g00429.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LSD

Protein Properties

Length: 342aa MW: 37393 Da PI: 4.1426

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00736g00429.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.2	5.7e-13	251	275	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+ V Peaxi162Scf00736g00429.1 251 CGSCRQLLSYPQGAKLVKCSCCQIV 275 ***********************98 PP
2	zf-LSD1	44.4	2.6e-14	289	312	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC +lL+YP+GApsVRC++C + Peaxi162Scf00736g00429.1 289 CGGCAVLLMYPYGAPSVRCSSCRF 312 **********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.5E-14	248	278	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-10	251	275	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.5E-10	286	314	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.9E-12	289	312	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDENLNKIEK AQIEEEEDEG PPPGFDCVAV VVSENTNDDD NEGPPAGWPL IPQQNDQQLL 60 LTTDVEMRSK EHESEDDEDG PPPGWDSVIK QKHLPPTPPV TEAVTCDIEM EKKEEVDEDE 120 DNSPPPGWQL IPQPPPVQTS TPPSGTQQAL LADVEMEKKE VVIEDEDNGA PPGWQLIPQL 180 QPLQTSPPPS GTQQAPLSEM EMGSKQEGTK NEEVKPHNKQ SMSHLQQMKP LVPQSSSHAA 240 PFSAEIGQMV CGSCRQLLSY PQGAKLVKCS CCQIVNYVLE AHDVGQVKCG GCAVLLMYPY 300 GAPSVRCSSC RFMTKIGIPP QWLAGSIRID SLKHLGTVNI EI

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDENLNKIEK AQIEEEEDEG PPPGFDCVAV VVSENTNDDD NEGPPAGWPL IPQQNDQQLL  60
LTTDVEMRSK EHESEDDEDG PPPGWDSVIK QKHLPPTPPV TEAVTCDIEM EKKEEVDEDE  120
DNSPPPGWQL IPQPPPVQTS TPPSGTQQAL LADVEMEKKE VVIEDEDNGA PPGWQLIPQL  180
QPLQTSPPPS GTQQAPLSEM EMGSKQEGTK NEEVKPHNKQ SMSHLQQMKP LVPQSSSHAA  240
PFSAEIGQMV CGSCRQLLSY PQGAKLVKCS CCQIVNYVLE AHDVGQVKCG GCAVLLMYPY  300
GAPSVRCSSC RFMTKIGIPP QWLAGSIRID SLKHLGTVNI EI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	3e-40	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015164145.1	1e-150	PREDICTED: uncharacterized protein LOC102593239 isoform X3
TrEMBL	A0A2G2XEQ4	1e-151	A0A2G2XEQ4_CAPBA; Protein LOL5
STRING	PGSC0003DMT400076422	1e-149	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	lsd one like 2