PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00739g00429.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 187aa    MW: 20699 Da    PI: 4.9894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00739g00429.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.21.4e-221469258
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                              +Dgy+WrKYGqKe+ gs++pr    Ct++   +Cp+kk+v+r ++dp ++e+tY+++H++
  Peaxi162Scf00739g00429.1 14 EDGYTWRKYGQKEILGSRYPR----CTHQklyNCPAKKQVQRLDDDPYIFEVTYRSQHTC 69
                              7****************9996....9*99999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-201271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-211270IPR003657WRKY domain
SMARTSM007748.7E-311371IPR003657WRKY domain
PfamPF031063.0E-201469IPR003657WRKY domain
PROSITE profilePS5081115.5371467IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGAPRMGNLE LPPEDGYTWR KYGQKEILGS RYPRCTHQKL YNCPAKKQVQ RLDDDPYIFE  60
VTYRSQHTCY MSATAPSVPS QQVEDITHQA TTAPPPPLML PPSTSASLSG HWLSMDIKPQ  120
GEGTSNAPFD IQSGTGPSGG RYGREVDYQP VVDMADAMFN SGSSSNNSMD LIFSSIDDKW  180
DSAEKKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-151469968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-68HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773917.11e-97WRKY transcription factor 55
TrEMBLM1AGZ71e-99M1AGZ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000226381e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-38WRKY DNA-binding protein 55