PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00740g00141.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Nin-like

Protein Properties

Length: 222aa MW: 26241 Da PI: 6.7965

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00740g00141.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.6e-26	88	138	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++++F+ pi++AAkeL v+lTvLK++CR+++I+RWPhRkiksl Peaxi162Scf00740g00141.1 88 TDTLELDEIQRFFHVPITKAAKELRVGLTVLKKRCRELNIMRWPHRKIKSL 138 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	78	159	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-22	90	138	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDSQSLNVLK VENQNDQFDW LYSEVEHLPS PFGTWQQDSR LSNGSLFNFE LDPYQFPNDV 60 QNTHLPFFGL EDFEEMIQEL GTGRQKKTDT LELDEIQRFF HVPITKAAKE LRVGLTVLKK 120 RCRELNIMRW PHRKIKSLQS LIDNVKEMGL ASSEVKMLEE HQRMLEKVPE MELTERTKKL 180 RQACFKANYK KRRAMAATFL DISEHIKVSN KKLCRSYLDE EE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471868.1	9e-97	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	5e-42	RKD4_ARATH; Protein RKD4
TrEMBL	A0A1S4A5E2	2e-95	A0A1S4A5E2_TOBAC; protein RKD4-like
STRING	XP_009589276.1	1e-95	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-44	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]