PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00747g00018.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 640aa    MW: 72209.8 Da    PI: 5.3994
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00747g00018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.12.9e-2292192198
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+kvlt sd+ ++  l++p k + ++         k++  ++l+++d+sg +W++k+ + ++++r++lt+GW+ Fv++++L +gD
  Peaxi162Scf00747g00018.1  92 FCKVLTASDTKSNWGLSIPQKDVVKCfpvldmsRDKPT--QELMVKDLSGMEWRFKHVFGGHPRRHLLTNGWSAFVNSKKLVAGD 174
                               99*****************************8543433..48******************************************* PP

                               EEEEEE-SSSEE..EEEEE- CS
                        B3  79 fvvFkldgrsefelvvkvfr 98 
                                vvF +   +++  +++++ 
  Peaxi162Scf00747g00018.1 175 LVVFLR--GENGDVHIGFRH 192
                               *****3..367767887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-3586201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2887197IPR015300DNA-binding pseudobarrel domain
CDDcd100177.42E-2090191No hitNo description
SMARTSM010193.1E-1892194IPR003340B3 DNA binding domain
PROSITE profilePS5086312.73192194IPR003340B3 DNA binding domain
PfamPF023621.5E-1992191IPR003340B3 DNA binding domain
PfamPF065072.1E-8217267IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MWSMHPKKQN HVTSEGDDGL YRELWKAFAG PSMEIPRVGE LVYYFPGVHI QQVKNITEEV  60
YAEINLLPNH DQTEPTNPDF CRELPTPQIH SFCKVLTASD TKSNWGLSIP QKDVVKCFPV  120
LDMSRDKPTQ ELMVKDLSGM EWRFKHVFGG HPRRHLLTNG WSAFVNSKKL VAGDLVVFLR  180
GENGDVHIGF RHQSCQKSSI EVPTASSLDI KGVLGVASDA LAAQRPFSVY CKPQTSQFII  240
SLNKYLEAIN RGLGVSMTFK MPSGVANSHE SFACTTNEKD QMEINRCLHN TNEYLNEDGE  300
QMEDAEAIVY SPPQHCIAPS EIGEKRHSDT IYLPLVEGNV QSGEESKPEH NEVLNPAEIV  360
TIRGTEERKA STSSSRNFNP VQEEDLEGAE IIKDILPIVS QNLPLDYLMS SNTENEDFLP  420
IMQDSDRWQN VQGTDFPLPV RSPSGNHDMQ TFSLKDQQSS SKVVHPTSIS SQIPYEGPGH  480
ADEKVHWEGY HVARRYIPIL NKLISHYPST LSSFKATSSI FQSMCLEILA ELVYLLGQFT  540
MGSMDIKYLS EAKRYLRDLK LSGVEIGWLE KRLAKVEDVF TMKRLSIRRQ ELILGIEDTM  600
ATLRLMNEEL GSLNKELQKL SSEINVTTPA EDHSILEGLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-701826117296Auxin response factor 1
4ldw_A2e-701826117296Auxin response factor 1
4ldw_B2e-701826117296Auxin response factor 1
4ldx_A2e-701826117296Auxin response factor 1
4ldx_B2e-701826117296Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230990.10.0PREDICTED: uncharacterized protein LOC109211859 isoform X1
TrEMBLA0A314KI650.0A0A314KI65_NICAT; Auxin response factor
STRINGXP_009773406.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1534468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.12e-75auxin response factor 11