PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00770g00114.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 339aa    MW: 38036.6 Da    PI: 6.9013
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00770g00114.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.3e-33195252259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK vk+s+fpr+YYrCtsa+C+vkk+ver+ +dp++v++tYeg+H+h+
  Peaxi162Scf00770g00114.1 195 EDGYRWRKYGQKAVKNSPFPRNYYRCTSASCNVKKRVERCFNDPSIVVTTYEGKHTHP 252
                               8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381303.0E-971339IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.5E-35179254IPR003657WRKY domain
SuperFamilySSF1182901.57E-29186254IPR003657WRKY domain
PROSITE profilePS5081132.019189254IPR003657WRKY domain
SMARTSM007742.9E-39194253IPR003657WRKY domain
PfamPF031067.0E-26195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MESYKEAAVK MEDPMSYFDN IPVTYNHSFT GLMSDYNYGI EGKNNINSSL GFMELLGVQD  60
FCSASVFDVN STLSSTNFEL PKEENYQEPA VSLSEKEVKP SLHETKNHLS TVVADSANIL  120
NTPSTPNCSS ISSETNEGHT HTEDAEGEVV AGEQRHDQEQ TKTKQQLKAK KTSQKKQQRE  180
PRVAFMTKSE VDFLEDGYRW RKYGQKAVKN SPFPRNYYRC TSASCNVKKR VERCFNDPSI  240
VVTTYEGKHT HPSPMNMMSR PGFYPTRLPS PAAFSLPMQF SNITQSPHPQ FNNLISPLAL  300
NLDAANLVAQ HGRRFCTPSV AAAMMGDHQG LLQDLMPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-261872541077Probable WRKY transcription factor 4
2lex_A1e-261872541077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569166e-97EU056916.1 Solanum tuberosum WRKY transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231120.11e-151PREDICTED: probable WRKY transcription factor 23
SwissprotO229007e-52WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1J6IQJ41e-149A0A1J6IQJ4_NICAT; Putative wrky transcription factor 23
STRINGXP_009594706.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.15e-45WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]