PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00771g00216.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 272aa    MW: 31182.5 Da    PI: 9.726
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00771g00216.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.85e-2548134190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY +Y ++ GF+vr+ + +ks+++++i+ ++fvCskeg+r++++ k   ++r+++ tr gCk  l v+k++d+kw v +l+++H
  Peaxi162Scf00771g00216.1  48 NFYLHYTHRNGFNVRRGRVTKSRKDKSIIGQEFVCSKEGFRSKKNLK---TNRPQEITREGCKVLLYVSKKEDAKWDVCRLVSNH 129
                               6*****************************************98877...999******************************** PP

                      FAR1  86 nHela 90 
                               nHela
  Peaxi162Scf00771g00216.1 130 NHELA 134
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-2248134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MENSNIDEQN EIGSDMNGTT PFVPSSSVEN HKDLYIGMEF SSLGDSFNFY LHYTHRNGFN  60
VRRGRVTKSR KDKSIIGQEF VCSKEGFRSK KNLKTNRPQE ITREGCKVLL YVSKKEDAKW  120
DVCRLVSNHN HELATPNSKK FLGSKRQKSE AQKNLIDLLD DSGVHPGKIA SNFKTKSSMP  180
KLKTLYPMED EAAKVYTRKV FNIFQEELLL SQKFIFEKVE IDGLEMRPEK KLMTLQMKPK  240
RLEGWGSKLG GWGSRLEDWE SKLGGCESRI GD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167012.12e-73PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7EE032e-64A0A3Q7EE03_SOLLC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-24FAR1-related sequence 5