PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00774g00021.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 723aa    MW: 79720.5 Da    PI: 9.1433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00774g00021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-07624673147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Peaxi162Scf00774g00021.1 624 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 673
                               6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.19E-6424516IPR029071Ubiquitin-related domain
CDDcd017690.00116431502No hitNo description
PROSITE profilePS5129415.876619678IPR017930Myb domain
SMARTSM007172.0E-7623676IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10624674IPR009057Homeodomain-like
CDDcd116602.13E-17625675No hitNo description
SuperFamilySSF466891.44E-15625706IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPHIP RATRSARRRG SIRRKADGNG TCPFDLLATV AGKLLGDGES  60
SPDSASPART KEQCAIVKDE KVKEDEDRSL KEKTYADGCY ERGFFISELV SQAPVVNHCS  120
SELPHTQNDT FSGPASGIMS SDCSEKFLFA KQFVNEDSRD EHGNFSSKTE PEASGCGAFS  180
SCTLDTESDK HIKIELSNNA KVPYKRAAVY SSQFPDLWDS KPSPLVTSDD SVRLSLSTYN  240
APCRSLPVIR NDVKLATRDD DENSGCTQPS TPNKASGSAP RMRDRPIKKL LASKYWEENL  300
KSDDEGHANS GKCLLLCSPS YSFALGFDIK RIFPDGETTH AFQNRSIGYK HQRSQRDFPF  360
KKRKLFKCSM FSNSDGETST DGKCSSPTND FHGNASGNSK ASSGGRAAAG TSVFNGGRAS  420
FRPRDSHVKF RIKSFRVPEL FVEIPENATV GSLKACESRT VMEAVTSILG GGLRIGVVFQ  480
GKKVRDDNKT LLQTGISHDY KLDALGFSLE PNPIQASPPL GPDCRSCILP CDTPHPLTSC  540
PSPATVVHTG IRQGRSDDHT GTNLSNFVES DRDSAQSRPY TALEKISANS RALVPVTAVN  600
APEALSVVPL RKPKRSEATQ RRIRRPFSVA EVEALVQAVE KLGTGRWRDV KLRAFDNAKH  660
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLTA HAYWSQQQAK QQMKQPSETY  720
LLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-556117144107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354363QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577769.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E31e-125TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1U8HBI40.0A0A1U8HBI4_CAPAN; telomere repeat-binding protein 5-like isoform X2
STRINGPGSC0003DMT4000779690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-112TRF-like 2