PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00774g00221.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 77aa MW: 8893.39 Da PI: 8.0267

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00774g00221.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	32.4	1.2e-10	2	56	284	342
GRAS 284 kvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllr 342 +E++++g+ei+n++ace+++r+er e +++ Wr aGF+++pl+++++k++k+ ++ Peaxi162Scf00774g00221.1 2 LYEKVIFGKEIMNILACENTARVERPEPYKQsWR-----AGFQQLPLNQDIMKEVKAKIA 56 579**********************9864386.....8************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.3E-8	2	56	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MLYEKVIFGK EIMNILACEN TARVERPEPY KQSWRAGFQQ LPLNQDIMKE VKAKIATDAA 60 GIERQSYLCS LLLETCR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798121.1	1e-18	PREDICTED: scarecrow-like protein 30
Refseq	XP_016509006.1	1e-18	PREDICTED: scarecrow-like protein 30
Swissprot	Q9XE58	1e-15	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S4D6M8	3e-17	A0A1S4D6M8_TOBAC; scarecrow-like protein 30
TrEMBL	A0A1U7Y860	3e-17	A0A1U7Y860_NICSY; scarecrow-like protein 30
TrEMBL	A0A314UQS4	2e-17	A0A314UQS4_PRUYE; Scarecrow-like protein 14
STRING	XP_009798121.1	5e-18	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	5e-18	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]