PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00784g00045.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ARF

Protein Properties

Length: 877aa MW: 97776 Da PI: 5.9479

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00784g00045.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.3	1e-16	153	265	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE.............EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy...........rkksgryvltkGWkeF 68 f+k+lt sd++++g +++p++ ae+ ++ +++ ++l+ +d++ +W+ ++ ++++r++lt+GW+ F Peaxi162Scf00784g00045.1 153 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDVEWKCVPTMlssvyifvllhAGQPKRHLLTTGWSVF 236 99***************************7555555.59****77766554444555667777************ PP HHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 69 vkangLkegDfvvFkldgrsefelvvkvfrk 99 v+a++L +gD+v+F ++++ +l+++++r+ Peaxi162Scf00784g00045.1 237 VSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 265 ***********..8889999*9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-41	137	293	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.4E-34	146	279	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.84E-17	152	264	No hit	No description
Pfam	PF02362	1.1E-14	153	265	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-14	153	266	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.151	153	266	IPR003340	B3 DNA binding domain
Pfam	PF06507	5.5E-34	290	373	IPR010525	Auxin response factor
SuperFamily	SSF54277	1.11E-6	749	825	No hit	No description
PROSITE profile	PS51745	21.372	751	835	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009908	Biological Process	flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MKLSTSGMGQ QAHEGDKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPVLLNDT TTIFASTLVN 120 WVTDICVGFQ EEQKDTYLPV EFGIPSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP 180 PLDFSQTPPC QELIARDLHD VEWKCVPTML SSVYIFVLLH AGQPKRHLLT TGWSVFVSAK 240 RLVAGDSVLF IWNEKNQLLL GIRRAVRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF 300 TVFFNPRASP SEFVIPLSKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGIGDLD 360 PVRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLTTFP MYPSLFPLRL KRPLYPGTSS 420 YQDNNSEAIN RMAWLRGNTG DLGSPSMNLQ SYGMLPWMQQ RVDSTILPND LNQHYQAMLA 480 SGLQSFGSGD LLKQQLMQFQ QPVQYLQHAN SDTSLLQQQQ QQQVMQQAAH QHMLPAQTQM 540 LSENLQRQPQ QQSNNQSEEQ AHQHSYQEPF QMPHDQLQQR QPSNISSPSF LRADFADLNS 600 KFSAATAPSG VQNMLGSLCS EGSSNSLNID RTGQSVIIEQ PPQQSWMSKF THSQLNNCSN 660 SSPIPSYGKD TNNLRENCSL DTHSQALFGA NVDSSGLLLP TTVSNVTTTS ADMSSMPLGA 720 SGYQSSLYGY VQDSPELLHN AGQIDPPNAT HTFVKVYKSG CVGRSLDISQ FHSYHELRRE 780 LGQMFGIDGF LEDPQRSGWQ LVFVDRENDI LLLGDDPWEA FVNNVWYIKI LSPEDVQKLG 840 KEEAESLNRG ALERMSSTNA DDRDLVSGMP SLGSLEY

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MKLSTSGMGQ QAHEGDKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPVLLNDT TTIFASTLVN  120
WVTDICVGFQ EEQKDTYLPV EFGIPSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP  180
PLDFSQTPPC QELIARDLHD VEWKCVPTML SSVYIFVLLH AGQPKRHLLT TGWSVFVSAK  240
RLVAGDSVLF IWNEKNQLLL GIRRAVRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF  300
TVFFNPRASP SEFVIPLSKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGIGDLD  360
PVRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLTTFP MYPSLFPLRL KRPLYPGTSS  420
YQDNNSEAIN RMAWLRGNTG DLGSPSMNLQ SYGMLPWMQQ RVDSTILPND LNQHYQAMLA  480
SGLQSFGSGD LLKQQLMQFQ QPVQYLQHAN SDTSLLQQQQ QQQVMQQAAH QHMLPAQTQM  540
LSENLQRQPQ QQSNNQSEEQ AHQHSYQEPF QMPHDQLQQR QPSNISSPSF LRADFADLNS  600
KFSAATAPSG VQNMLGSLCS EGSSNSLNID RTGQSVIIEQ PPQQSWMSKF THSQLNNCSN  660
SSPIPSYGKD TNNLRENCSL DTHSQALFGA NVDSSGLLLP TTVSNVTTTS ADMSSMPLGA  720
SGYQSSLYGY VQDSPELLHN AGQIDPPNAT HTFVKVYKSG CVGRSLDISQ FHSYHELRRE  780
LGQMFGIDGF LEDPQRSGWQ LVFVDRENDI LLLGDDPWEA FVNNVWYIKI LSPEDVQKLG  840
KEEAESLNRG ALERMSSTNA DDRDLVSGMP SLGSLEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-150	17	394	48	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:16107481, ECO:0000269\|PubMed:16829592}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00033	PBM	Transfer from AT5G37020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR167. {ECO:0000269\|PubMed:17021043}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350452.1	0.0	PREDICTED: auxin response factor 8-like isoform X2
Swissprot	Q9FGV1	0.0	ARFH_ARATH; Auxin response factor 8
TrEMBL	A0A3Q7EY57	0.0	A0A3Q7EY57_SOLLC; Auxin response factor
STRING	Solyc02g037530.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3857	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	auxin response factor 8

Publications ? help Back to Top
Liu N, et al. Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato. J. Exp. Bot., 2014. 65(9): p. 2507-20 [PMID:24723401] Minato N, et al. The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways. Sci Rep, 2014. 4: p. 7399 [PMID:25492247] Ortega-Amaro MA, et al. Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance. Front Plant Sci, 2014. 5: p. 782 [PMID:25653657] Wang Y, et al. MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development. Plant Physiol., 2015. 168(3): p. 984-99 [PMID:25941314] Barik S, et al. Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species. Sci Rep, 2015. 5: p. 14611 [PMID:26459056] Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants. Plant Physiol. Biochem., 2016. 104: p. 146-54 [PMID:27031426] Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8. Plant Physiol., 2016. 172(3): p. 1853-1861 [PMID:27688620] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Zhang GZ, et al. Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis. Plant Cell Rep., 2017. 36(12): p. 1995-2006 [PMID:29027578] Zheng K, et al. Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis. Front Plant Sci, 2017. 8: p. 1813 [PMID:29114256] Liu Z, et al. ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis. Plant Cell Physiol., 2018. 59(1): p. 179-189 [PMID:29145642] Ghelli R, et al. A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis. Plant Cell, 2018. 30(3): p. 620-637 [PMID:29514943]