PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00795g00028.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 454aa    MW: 51986.6 Da    PI: 6.4043
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00795g00028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.81.4e-23100205186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                               +Wt+++v++Li ++ +++++++++                    +kk++W++vs++m ergf +sp+qC++k+++lnkryk++++
  Peaxi162Scf00795g00028.1 100 KWTDNMVRLLIMVVYYIGDEVGSEGnnnivdnngkkkgsgvgvlQKKGKWKSVSRAMLERGFYVSPQQCEDKFNDLNKRYKRVND 184
                               7**************9999999643367888889999999********************************************* PP

                  trihelix  67 gekkr.tsessstcpyfdqle 86 
                               + +k+ +++++++ ++++ ++
  Peaxi162Scf00795g00028.1 185 ILGKGtACRVVENQSLLETMD 205
                               *****55***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2098231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSHGLEMSLH HHIPQQNPHH PMQQHPTHPQ VQHPPHPIVS YQETENQQQT LRQGFPFGNN  60
KAKNQSLTFS DDEETGPGIS ADNNSNGDDK RKNCPWQRMK WTDNMVRLLI MVVYYIGDEV  120
GSEGNNNIVD NNGKKKGSGV GVLQKKGKWK SVSRAMLERG FYVSPQQCED KFNDLNKRYK  180
RVNDILGKGT ACRVVENQSL LETMDHLSTK MKEEVKKLLN SKHLFFREMC AYHNSCGHGN  240
GTTSGGAGAS GGIVQHSPEV VAEANSQQRC LHSSENAKMP KGDEELDDDE DDDDDDDDHD  300
DDDEVSGARG QDHHSDEHDD DVDERSRKRQ RKMGSLSSPM VQQLSVEMAN VIQDGGRSST  360
EKRQWLKTRL VQLEEQHVSY LCQAFELQKQ RLKWEKFTSK KEREMEKEKL INERKKLENE  420
RMVLLLRQKE LELLDFHQQH PNYNKNSDPS SITG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-92HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-92HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513409.10.0PREDICTED: ESF1 homolog, partial
TrEMBLA0A1S4DJE60.0A0A1S4DJE6_TOBAC; ESF1 homolog
STRINGXP_009788508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-96sequence-specific DNA binding transcription factors