PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00799g00216.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 327aa    MW: 38230 Da    PI: 6.7928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00799g00216.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.48.1e-5591381129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPt+eelv +yL+kk++++k++l +vi+e+d+y++ePwdL+ k    +++++ewyfFs++dkky+tg+r+nrat +g+
  Peaxi162Scf00799g00216.1   9 VPPGFRFHPTEEELVGYYLRKKIAAQKIDL-DVIREIDLYRIEPWDLQdKcrIGYEKQNEWYFFSHKDKKYPTGTRTNRATMAGF 92 
                               69****************************.9***************943432234677************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk+v++ k++l+g++ktLvfy+grap+g+kt+W+mheyrle
  Peaxi162Scf00799g00216.1  93 WKATGRDKAVHD-KSKLIGMRKTLVFYRGRAPNGQKTEWIMHEYRLE 138
                               ************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-596159IPR003441NAC domain
PROSITE profilePS5100558.6489159IPR003441NAC domain
PfamPF023652.0E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDTNESCTVP PGFRFHPTEE ELVGYYLRKK IAAQKIDLDV IREIDLYRIE PWDLQDKCRI  60
GYEKQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVHDKSKLIG MRKTLVFYRG  120
RAPNGQKTEW IMHEYRLESE DNVKSLQEEG WVVCRAFKKR ITNQAKTNVG EGCESNYFYD  180
ESMYISRQLP PTNFMSQNLL RKQEIEAMSY NLNFLHSDQF VHELPQLESP SLPLIKRPSS  240
MSLASMENNH EEYDQQTTKR SKNDRMVTDW RALDKFVASQ LSHDQESYEP QNGSDLGMFL  300
LQSGKVEGPK LDDLSSTHDN GICIFDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5221608169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262299.10.0PREDICTED: NAC domain-containing protein 37-like
RefseqXP_019262300.10.0PREDICTED: NAC domain-containing protein 37-like
SwissprotQ9SL411e-137NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A314L8L40.0A0A314L8L4_NICAT; Nac domain-containing protein 37
STRINGXP_009761611.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-129vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]