PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00803g00314.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18629.6 Da    PI: 7.6831
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00803g00314.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.75.6e-12641540
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                              +k  + v ++  +n++ KKA ELS+LC++e+a+iif
  Peaxi162Scf00803g00314.1  6 DKHSQDVALTHMQNTLCKKAMELSILCGIEIAIIIF 41
                              566778999999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.661154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-12269IPR002100Transcription factor, MADS-box
PfamPF003196.4E-9641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRLTRDKHSQ DVALTHMQNT LCKKAMELSI LCGIEIAIII FRLGDLPVLY GNPNIESVVN  60
KFLKSQLTKC LSCRCMLCER ANCREEMCKM IKKEKEFQAN DENQNHLNQK IDKLSKYLNN  120
KTILLQSAIG ADNLNSAEEM NVTGLEDPKS ISEMSVASSS TVYPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-12AGAMOUS-like 29