PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00809g00423.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 183aa    MW: 19993 Da    PI: 8.043
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00809g00423.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601345.9e-42351341100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+
  Peaxi162Scf00809g00423.1  35 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARLRDPVYGSAGAICQLQK 119
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+a+la++++e
  Peaxi162Scf00809g00423.1 120 QVNELQAQLAKTQAE 134
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.94534135IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-4235132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MESSGTTVTT TTSPSLCSVS SSRNSPSPPL VVASPCAACK ILRRRCAEKC VLAPYFPPND  60
PIKFTTAHRV FGASNIIKFL QELPEYQRAD AVSSMVYEAN ARLRDPVYGS AGAICQLQKQ  120
VNELQAQLAK TQAELVNIQC QQANIMALVY MEMGQSPPTS PEQSLDKVHQ PLFSIVITHM  180
SQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-42331429118LOB family transfactor Ramosa2.1
5ly0_B1e-42331429118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755184e-81HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079078.11e-98LOB domain-containing protein 1-like
SwissprotQ9SK082e-66LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM1AC135e-95M1AC13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000194109e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.17e-67LOB domain-containing protein 11