PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00818g00414.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 138aa MW: 15526.6 Da PI: 8.2785

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00818g00414.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.3e-38	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+ +Gasnv k+l++++e++r d+++sl+yeA +r+++P+yG+vg+i+ l+q Peaxi162Scf00818g00414.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHRTYGASNVGKMLQQVQEHHRADVANSLYYEAYCRIKNPIYGCVGIISVLHQ 89 6********************************************************************************** PP DUF260 86 qleqlkaelallkeel 101 ++ +l+ +la++++e+ Peaxi162Scf00818g00414.1 90 EIYNLQCQLAKVQAEI 105 *********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.669	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHRT YGASNVGKML QQVQEHHRAD 60 VANSLYYEAY CRIKNPIYGC VGIISVLHQE IYNLQCQLAK VQAEISVLEA QAQTQAQQGQ 120 QIELSPTISG NSFGDQNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-52	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238658.1	1e-73	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	7e-46	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1J6IQ34	4e-78	A0A1J6IQ34_NICAT; Lob domain-containing protein 24
STRING	XP_009780781.1	5e-71	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-47	LOB domain-containing protein 24