PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00831g00037.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SRS

Protein Properties

Length: 332aa MW: 36002.7 Da PI: 8.5627

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00831g00037.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.7	1.2e-67	100	258	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.k 79 +g+++CqdCGnqakk+C h RCRtCC+ rgf+C+thvkstWvpaa+rrerqqq + ++s++++++ ++ ++kr+re Peaxi162Scf00831g00037.1 100 EGNVNCQDCGNQAKKGCPHLRCRTCCRGRGFQCQTHVKSTWVPAARRRERQQQFSHQQSQQQNQQlslgsadHTIHPKRPREYmA 184 6899*********************************************9999888887777779998777777899998834 PP DUF702 80 skkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++l+ t+l++++s e+ + +P+evss+avfrcv+vs+++d+ee++aYqtav+igGhvfkG+LydqG+e+ Peaxi162Scf00831g00037.1 185 GPSNTSLAYTRLPTTSSGLEVGGH-FPSEVSSPAVFRCVKVSAMEDAEEQYAYQTAVNIGGHVFKGMLYDQGPET 258 557788999999999988777665.**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-65	102	257	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-24	104	146	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.6E-28	208	256	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MSWFFNLGGG KDQEQQEQEL ATNSNLLLFK NEEIYNKGLE LWQQSYHLSQ QRSQNQVQDV 60 DFSVGVGPSS SSKPSSSNNS SKSLGFRVMR PGGSSSGAGE GNVNCQDCGN QAKKGCPHLR 120 CRTCCRGRGF QCQTHVKSTW VPAARRRERQ QQFSHQQSQQ QNQQLSLGSA DHTIHPKRPR 180 EYMAGPSNTS LAYTRLPTTS SGLEVGGHFP SEVSSPAVFR CVKVSAMEDA EEQYAYQTAV 240 NIGGHVFKGM LYDQGPETRY SSGGGGGESS SGGGAVAQQR LNLMASATTA TTTTAATSHQ 300 HVALSMFDPS LYPSQLSAFM AGTQFFPPPR PN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628417.1	1e-126	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Refseq	XP_016510843.1	1e-126	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	K4B6C9	4e-78	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4DBW9	1e-124	A0A1S4DBW9_TOBAC; protein SHI RELATED SEQUENCE 5-like
STRING	XP_009628417.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-67	SHI-related sequence 5

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]