PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00839g00212.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 133aa    MW: 15022.3 Da    PI: 4.5443
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00839g00212.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.71.9e-195511144100
                    DUF260  44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                ll++lpe++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq++ l+++lal+++e
  Peaxi162Scf00839g00212.1  55 DLLQKLPEHQRCDAVSSMVYEANARVRDPVYGCVGAISCLQQQIDILQTQLALAQAE 111
                               689*************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.3264112IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-1755109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MLEESLSICL FHDLVHKHEH IVKDLFQSSH DISIVFIIIY AYGPNAMTIL GAFKDLLQKL  60
PEHQRCDAVS SMVYEANARV RDPVYGCVGA ISCLQQQIDI LQTQLALAQA EVVQVRMQQL  120
LFTMDMVEDD GES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-184512042119LOB family transfactor Ramosa2.1
5ly0_B2e-184512042119LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-46HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927390.15e-34LOB domain-containing protein 4-like
TrEMBLA0A2G9HN485e-32A0A2G9HN48_9LAMI; Uncharacterized protein
STRINGEOY138654e-32(Theobroma cacao)
STRINGXP_010093051.14e-32(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.17e-18LOB domain-containing protein 4