PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00840g00121.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 237aa    MW: 27038.4 Da    PI: 5.7103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00840g00121.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-161499146
                              TSSS-HHHHHHHHHHHHHTTTT.........................................-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.........................................tWktIartmgkgRtlkqcksrwqk 46
                              rg W+++Ede+l+++  ++G+g                                         +W+ Ia++++ gRt++++k++w++
  Peaxi162Scf00840g00121.1 14 RGQWSPDEDEILKNYLLKHGTGgnwitlplragsllslsrhtrqnyviyyliitqvyelfllcRWSIIASKLP-GRTDNDVKNHWNT 99
                              89***********************************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-22535IPR009057Homeodomain-like
PROSITE profilePS5129412.2159105IPR017930Myb domain
SMARTSM007173.4E-1113103IPR001005SANT/Myb domain
SuperFamilySSF466895.35E-1114102IPR009057Homeodomain-like
CDDcd001676.53E-81799No hitNo description
PfamPF002492.1E-67799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2277108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRTPCCDKN KVKRGQWSPD EDEILKNYLL KHGTGGNWIT LPLRAGSLLS LSRHTRQNYV  60
IYYLIITQVY ELFLLCRWSI IASKLPGRTD NDVKNHWNTK LKKKLLAKNA NPTSSFDESN  120
EVFNTSTPNA LLFMVPKEEE KQAPYQFPFP NMDSAGLSIN TNNIDQKHFP IPSFTQENSK  180
NSGTSSVSFD ETNWFEKGAN DSFEGFPLGF STDEIMDGIW STQQSLFEEI DFPSTFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610486.14e-79PREDICTED: transcription factor RAX1-like
TrEMBLA0A1U7YE683e-77A0A1U7YE68_NICSY; transcription factor RAX1-like
STRINGXP_009610486.12e-78(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1559057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.14e-30myb domain protein 37